Biology

Transcription Element Search Software (TESS) Transcription Element Search Software (TESS)- Very helpful software for locating and displaying transcription factor binding sites within DNA sequences - from the Univ. of Penn. Zinc Finger Tools Zinc Finger Tools- Helps users design zinc finger transcription factors. BioGRID BioGRID- Database of genetic and physical interactions. It contains interaction data from many sources, including several genome/proteome-wide studies, the MIPS database, and BIND. Ligand-Gated Ion Channel Database Ligand-Gated Ion Channel Database- LGICdb is a curated repository of genes coding for subunits of Ligand-Gated Ion Channels. Malaysian Genomics Resource Centre Berhad Malaysian Genomics Resource Centre Berhad- MGRC provides contract genomes services, sequencing services, data and access services. PANDORA PANDORA- Protein ANnotation Diagram ORiented Analysis service that extracts biological information from user supplied sequences. Center for Biological Sequence Analysis Center for Biological Sequence Analysis- Offers more than 30 online services for DNA and protein bioinformatics analysis. BioModels Database BioModels Database- Resource for storing, searching and retrieving published mathematical models of biological interests. Models present in BioModels Database are annotated and li… WebACT WebACT- A database of sequence comparisons between all publicly available prokaryotic genome sequences, allowing the on-line visualisation of comparisons between up to five genomi… iHOP iHOP- Uses the network of genes and proteins as a natural way of accessing the millions of biomedical abstracts in PubMed. Advanced Genetics Wizard Advanced Genetics Wizard- Online program that calculates the distribution of offspring genotypes from dominant, codominant and recessive gene crosses, for up to 6 genes. PubCrawler PubCrawler- An online service for periodically performing predefined searches at NCBI, reporting new results by email or on the web. Carnac Carnac- A free software tool for analysing the hypothetical secondary structure of a family of homologous RNA. Systems Biology of Photosynthesis Systems Biology of Photosynthesis- Open web platform for modeling and reverse engineering of photosynthetic dynamism. Mulan Mulan- Performs single-coverage local multiple DNA sequence alignments of finished and draft-quality genome sequences. It also provides with an option to predict transcription fac… BIOBASE BIOBASE- The focus of the GBF project "Molecular Bioinformatics of Gene Regulation" are regulatory genomic signals and regions that govern transcriptional control based on TRANSFA… Verbumculus Genetic Sequence Analyzer Verbumculus Genetic Sequence Analyzer- An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Requires Java support in browser. Also … Molecular Informatics Resource for the Analysis of Gene Expression Molecular Informatics Resource for the Analysis of Gene Expression- Information methodologies, tools, and technologies relating to the study of gene expression and signal transduc… INCBI Irish National Centre for BioInformatics INCBI Irish National Centre for BioInformatics- Hosts Irish embnet node, Gives links to Database browsing and interrogation at SRS, European (EBI) servers, Blast server for parasi… Geneva Bioinformatics (GeneBio) S.A. Geneva Bioinformatics (GeneBio) S.A.- Provides proteomics software tools and databases including SWISS-PROT, PROSITE, SWISS-2DPAGE and Melanie. They also offer a secure version of… Center Structural Biology: Programs and Tools Center Structural Biology: Programs and Tools- User guides and worked examples for software applications in structural and molecular biology - from Yale Univ. GenOuest Bioinformatics Platform GenOuest Bioinformatics Platform- Provides a complete set of bioinformatics tools and public databanks updated daily, and a range of links to seminars, training courses and platfo… Systolic Accelerator for Molecular Biological Applications (SAMBA) Systolic Accelerator for Molecular Biological Applications (SAMBA)- Processor array for speeding comparison of biological sequences using a parameterized version of the rigorous S… BioPlanet BioPlanet- Features job postings, discussion groups, resumes and career resources. Bioinformatics Jobs Bioinformatics Jobs- Worldwide job offers in bioinformatics. Northeastern University Bioinformatics Masters Program Northeastern University Bioinformatics Masters Program- From the Biology department and in cooperation with Boston University. Emphasis on the ability to integrate knowledge from … NCBI's Genes and Disease NCBI's Genes and Disease- Information about several medically important genes and related diseases. Illustrates the use of bioinformatics in their study. International Bologna Master in Bioinformatics International Bologna Master in Bioinformatics- A two year, international master's programme in bioinformatics at the Universita di Bologna, Italy. Master's Degree Programme in Bioinformatics Master's Degree Programme in Bioinformatics- An international, two-year Master's programme jointly managed by the University of Tampere and the University of Turku, Finland. Bioinformatics Bioinformatics- A one-year, international master's programme in bioinformatics at the University of Skovde, Sweden. Bioinformatics Institute of India Bioinformatics Institute of India- Blog focusing on bioinformatics, biotechnology, pharma regulatory affairs, IPR and clinical trials. JISCmail: Bioinformatics JISCmail: Bioinformatics- Forum featuring various aspects, events and developments in the bioinformatics field. Geospiza: Education Geospiza: Education- Instructional materials for teaching bioinformatics. These include animated tutorials on topics such as BLAST, finding mutations in a protein, and graphing wi… Helsinki Masters in Bioinformatics Helsinki Masters in Bioinformatics- A two year Masters Degree Programme in Bioinformatics (MBI) offered by the University of Helsinki and Helsinki University of Technology, Finlan… Perlsource Informatics Perlsource Informatics- Provides online courses in Perl programming for bioinformatic tools. The Swiss Institute of Bioinformatics Homepage (SIB) The Swiss Institute of Bioinformatics Homepage (SIB)- SIB operates the ExPASy proteomics server and the Swiss node of EMBnet. Teaching activities include a series of post-graduate… Openhelix Openhelix- Provides onsite training on specific bioinformatics databases and tools. Also offers bioinformatic software testing and research consulting services. Bimatics Bimatics- Bioinformatics group for students interested and/or working in the bioinformatics/computational biology fields. Offers opportunities to exchanging information and sharin… Boston University Bioinformatics Graduate Programs Boston University Bioinformatics Graduate Programs- Interdisciplinary PhD and Masters Programs that include an internship in the local industry companies. In conjunction with the … MBB452a: Genomics and Bioinformatics (Yale University) MBB452a: Genomics and Bioinformatics (Yale University)- Bioinformatics course at Yale University. All course slides are available online. Human Genome Project Education Resources Human Genome Project Education Resources- A resource for introductory information on the Human Genome Project. Bioinformatics Information Bioinformatics Information- Maintained by Dr. Seyeon Weon, Korea providing information on courses, a database archive, software archive and online resources. Bioinformatics and Computational Biology Bioinformatics and Computational Biology- Graduate program at Iowa State University offering Undergraduate Major (BCBio) and the PhD program (BCB). C.elegans Network C.elegans Network- Provides navigation to C. elegans/mammalian Bioinformatics, aging, oxidative stress (Channel 1); 1-2 new recent abstracts featured/week (Channel 2); Technology … Bioinformatics Institute Bioinformatics Institute- Singapore Bioinformatics conducting informatics research, development, and training, to generate knowledge from large volumes of Biology and Chemistry da… Graduate Program in Bioinformatics Graduate Program in Bioinformatics- The University of British Colombia Bioinformatics Centre offers M.Sc. and Ph.D. degrees to students doing research in the field of bioinformati… Chickscope 1.5 Chickscope 1.5- Students raise chicken embryos in the classroom and obtain magnetic resonance images through the Internet. ProteinLounge ProteinLounge- Bioinformatics portal which integrates protein information, databases and research tools for researchers and students. Subscription based service. Bioinformatics.ca Links Directory Bioinformatics.ca Links Directory- Features curated links to molecular resources, tools and databases. Bioinformatics.fr Bioinformatics.fr- Contains resources on Bioinformatics classified by categories.