Biology

Oncomine Oncomine- Offers online cancer gene expression analysis. Use a compendium of 10,000+ cancer transcriptome profiles with an analysis engine to provide data-mining and data visualiz… Bioxing Bioxing- Provides database systems and data mining for high-throughput DNA and protein microarrays. Ingenuity Pathways Analysis Ingenuity Pathways Analysis- Offer a web-based mammalian biology knowledgebase and analysis tool used for drug discovery and genomic data analysis. GeneGo Inc. GeneGo Inc.- Developer of bioinformatics software to parse and display microarray data. Genomatix Software GmbH Genomatix Software GmbH- Provides hardware, software and services for the analysis of next generation sequencing data, microarray data and genomic data in general with a focus on … Bio::Neos Bio::Neos- Supplier of bioinformatics software for mutation discovery. Provide custom software. IO Informatics IO Informatics- Provides scientists in pharmaceutical and biotechnology research tools to optimize the mining, analysis and management of life science data. Gene Codes Corp. Gene Codes Corp.- Developer of Sequencher for DNA sequence alignment and analysis on Windows and Mac platforms. CLC bio CLC bio- Supplier of bioinformatics software for DNA, RNA and protein analysis. Provides bioinformatics consulting services, focusing on custom designed data analysis and developm… UniPro UniPro- Russian company that provides customizable software for analysis, annotation, and manipulation of genetic sequences AgileBio AgileBio- LIMS and collaborative software for molecular biology labs. Informatics Informatics- Providing integrated information management solutions for the life sciences. Health Discovery Corporation Home Page Health Discovery Corporation Home Page- HDVY is a biotech company performing biomarker discovery in genomics and proteomics using advanced technologies such as support vector mach… Quantiom Quantiom- Products and services for bioanalytical data analysis. Decodon Decodon- Developers of the Delta2D software for difference analysis of 2D electrophoresis gels. Nonlinear Dynamics Nonlinear Dynamics- Develops scientific software for proteomics, genomics, drug discovery and bioinformatics. Products include Phoretix, Progenesis and Progenera. Seascape Learning Seascape Learning- Distributes structural bioinformatics software and educational material. MathEcology, LLC MathEcology, LLC- Mathematical model development for biological, ecological, and epidemiological applications. Metalife AG Metalife AG- Developing bioinformatics software for sequence analysis, sequence based predictions, and biological pathway analysis and visualization. Biomax Informatics AG Biomax Informatics AG- Offers annotated genome database, and DNA and protein sequence analysis tools. Geospiza, Inc. Geospiza, Inc.- Geospiza's bioinformatics software helps service, research, and clinical laboratories manage and analyze data from genomics, DNA sequencing, genotyping and proteom… Genomatica, Inc. Genomatica, Inc.- Innovator of in silico systems biology, building proprietary cellular-level models to accelerate the identification and production of more effective drugs, chemi… BioDiscovery, Inc. BioDiscovery, Inc.- Offers microarray bioinformatics software and services. MetaHelix Life Sciences MetaHelix Life Sciences- Metahelix Life Sciences is a company that specializes in scientific consulting, contract research, application software and product development in the eme… Metabolic Explorer Metabolic Explorer- Explores and designs metabolic pathways. INCOGEN, Inc. INCOGEN, Inc.- The Institute for Computational Genomics (INCOGEN) focuses on computational and data management solutions to the complex challenges faced by researchers in plant an… GeneData GeneData- Provides customizable software solutions and related scientific services for the analysis of genomics and proteomics data. LabVantage Solutions LabVantage Solutions- Global provider of workflow driven automation tools, knowledge management software, implementation services, and consulting to leading discovery-oriented, hi… Informagen Informagen- Produces DNA secondary structure prediction software including alignments and Chous-Fasman analysis. Compugen Compugen- Develops and markets platforms, tools and products that accelerate post-genomic research, the advanced study of proteins and protein pathways, and drug target discovery. Matrix Science Matrix Science- Mascot, the on-line search engine for protein identification using mass spectrometry data Biodatabases Biodatabases- Molecular database technologies. To-Oracle database conversions. Data-mining and eCommerce development for genomics and proteomics. Clondiag Chip Technologies Clondiag Chip Technologies- Develops software for the analysis and management of microarray data. Genamics Genamics- Supplier of DNA and protein sequence analysis software. Accelrys Accelrys- Supplier of bioinformatics software for gene and protein sequence analysis, high-throughput screening systems and databases for managing bioassay information. Formerly O… ePitope Informatics ePitope Informatics- Specializes in epitope prediction and protein analysis for proteomics, diagnostics, therapeutics, life science research, and antibody production. 3rd Millennium, Inc. 3rd Millennium, Inc.- Our bioinformatics consulting, systems development, and integration services help ensure your bioinformatics systems are fully geared toward your success and… NimbleGen Systems, Inc. NimbleGen Systems, Inc.- Provides customized DNA microarray using provided design software Bioinformatics Made Easy Bioinformatics Made Easy- Blog with lessons, tutorials, information and resources. Buried Treasure Buried Treasure- Lars Juhl Jensen's blog on computational biology. It features unpublished analyses, commentaries on peer-reviewed research, and live coverage from conferences. BioMolecular Engineering Research Center BioMolecular Engineering Research Center- Tools and methods for computational biology. Working on secondary protein structure prediction, providing reliable profiles, and developi… Genepop on the Web Genepop on the Web- Online version of the program for populational genetics. JustBio: Online Tool Set JustBio: Online Tool Set- A suite of online tools for analysis of DNA/RNA, proteins and arrays. TFM Explorer TFM Explorer- Scans sequences for potential transcription factor binding sites using JASPAR and TRANSFAC. Metab2MeSH Metab2MeSH- Web application that searches biological substances or MeSH terms and displays resulting pairs of substances and MeSH terms that match the search term. Gene2MeSH Gene2MeSH- Web application that searches gene symbols or MeSH terms and displays resulting pairs of genes and MeSH terms that match the search term. gp2fasta gp2fasta- Converts gp files from NCBI GenPept format to fasta. Its main purpose is to create fasta files with short, but still accurate headers for sequence. GenePattern GenePattern- This platform provides over 100 methods for the analysis and visualization of gene expression, copy number, proteomic and other data. It enables biologists to add new… Docking Server Docking Server- Provides an internet service that calculates the site, geometry and energy of small molecules interacting with proteins. Mobyle Mobyle- Framework and web portal specifically designed for the integration of bioinformatics software and databanks. Provides a tutorial and an interactive guided tour.