Asia

Instructional Technology in Plant Pathology Instructional Technology in Plant Pathology- Archive of the first online symposium with papers and forum discussions on instructional technology in resource-poor countries, copyri… American Phytopathological Society Meetings American Phytopathological Society Meetings- Details of annual meetings with content search of abstracts (1999 to current) and other relevant meetings. Genevestigator Genevestigator- Multi-organism microarray database and expression meta-analysis tool. Kyoto Encyclopedia of Genes and Genomes (KEGG) Kyoto Encyclopedia of Genes and Genomes (KEGG)- Graphical and hypertext-based information from Kanehisa Laboratories in the Bioinformatics Center of Kyoto University, Japan. Genomics Portals Genomics Portals- Integrative platform for analyzing a large collection of genome-scale datasets (more than 400 million data points). European Nucleotide Archive (ENA) European Nucleotide Archive (ENA)- Provides a comprehensive record of the world's nucleotide sequencing information. Contains databases of next generation sequencing reads, includ… Polbase Polbase- Repository of biochemical, genetic, and structural information about DNA polymerases. GeneExpress GeneExpress- Designed for analysis of genomic regulatory sequences of higher eukaryotes. Includes several databases and programs for visualization of the information contained. Fr… BATEx BATEx- Data base for gene expression data from plants. Oncomine Oncomine- Compendium of cancer transcriptome profiles with analysis engine. Exploring the Metabolic and Generic Control of Gene Expression Exploring the Metabolic and Generic Control of Gene Expression- Database with the data for the experiments in the paper - DeRisi et. al. Science 278: 680-686. Includes text files … StemBase StemBase- A database containing gene expression data from human and mouse stem cells and their derivatives. IRESite: The Database of Experimentally Verified IRES Structures IRESite: The Database of Experimentally Verified IRES Structures- This database contains information about the experimentally studied IRES (Internal Ribosome Entry Site) segments. RNase P Database RNase P Database- A compilation of RNase P sequences, sequence alignments, secondary structures, three-dimensional structures, and accessory information. ArrayExpress ArrayExpress- Database of gene expression and other microarray data at the European Bioinformatics Institute (EBI), located at the Wellcome Trust Foundation in Cambridge, UK. Allen Brain Atlas Allen Brain Atlas- Database of gene expression patterns in the mouse brain. GenePaint GenePaint- Database of gene expression patterns in the mouse embryo. From Max-Planck-Institute for Biophysical Chemistry, Dept. Genes and Behavior, Göttingen, Germany The Database of Rice Transcription Factors (DRTF) The Database of Rice Transcription Factors (DRTF)- Free of charge database of transcription factors of rice. From CBI, Peking University, China. Ribosomal Database Project Ribosomal Database Project- From Center for Microbial Ecology, Michigan State University, USA Rice Transcription Factor Database Rice Transcription Factor Database- RiceTFDB is a public database of rice genes involved in transcriptional control. From the University of Potsdam, Berlin, Germany. Gene Expression Omnibus Gene Expression Omnibus- Database of gene expression data from NCBI (National Center for Biotechnical Information). Includes a definable search by different characteristics. WormBase WormBase- Data bases on the genetics of C elegans and related nematodes. Mirage Mirage- Information methodologies, tools, and technologies relating to the study of gene expression and signal transduction. From the Institute for Transcriptional Informatics (IF… Gene Expression in Tooth Gene Expression in Tooth- Database on the expression of different genes in the developing tooth. Pande Group Pande Group- Folding simulations for fusion peptides, proteins and RNA with aim of predicting structure from genome by research at Stanford University, California. AutoDock AutoDock- A suite of automated docking tools. It is designed to predict how small flexible molecules, such as substrates or drug candidates, bind to a receptor of known 3D structu… EGO EGO- A parallel program for molecular dynamics simulations of biomolecules. B: On-line Molecular Modeling B: On-line Molecular Modeling- "B" (formerly known as Biomer) is a Java-based molecular modeling program for small organic molecules and biopolymers. Supports nucleic acids (DNA/R… Ascalaph Designer Ascalaph Designer- Program for creating molecular models, molecular mechanics simulations and development of the force fields by quantum chemical methods. Abalone Abalone- Program for bio-molecular modeling, particularly for molecular graphics and dynamics with implicit and explicit water models.