Biology

Influenza Virus Resource Influenza Virus Resource- Provides data obtained from the NIAID Influenza Genome Sequencing Project as well as from GenBank, combined with tools for flu sequence analysis and anno… Influenza Virus Database (IVDB) Influenza Virus Database (IVDB)- Provides an integrated information resource and analysis platform for genetic, genomic, and phylogenetic studies of influenza virus. CellProfiler CellProfiler- Open source image analysis software designed for biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of… Random Genetic Optimization Random Genetic Optimization- Genetic algorithms are a new approach to modeling based on the evolution theory in biology and use concepts such as population, descendant, parents, m… HyPhy: Hypothesis Testing Using Phylogenies HyPhy: Hypothesis Testing Using Phylogenies- Free multiplatform software package intended to perform maximum likelihood analyses of genetic sequence data. STRand STRand- Open-source program, provided by Davis' Veterinary Genetics Lab at the University of California, to automate or speed up the analysis of DNA fragment length polymorphism s… Gene Expression Open Source System Gene Expression Open Source System- Open source database and analysis package used to store and analyze gene expression data. Includes microarray center workflow management, and r… OpenBiomind OpenBiomind- OpenBiomind is an open source toolkit for analysis of gene expression, SNP and other biological datasets using advanced machine learning and pattern mining techniques… Phenosystems Phenosystems- Software company developing user friendly tools for the molecular genetics community. Provides details of products, R and D collaborations and news. Seqool Seqool- Free Windows software tool for the analysis of DNA and RNA sequences. It includes several sequence statistics and a comprehensive set of signal search methods. CounterTrace II DNA Sequencing CounterTrace II DNA Sequencing- Software and reagent for improving the quality and read length of DNA sequence traces collected on the ABI 3730 DNA sequencer. BioConstructor Molecular Cloning Software BioConstructor Molecular Cloning Software- BioConstructor is a bioinformatics solution focussing on molecular cloning. Runs on Windows, Mac OS X, Linux. PyMoods PyMoods- A software application for visualizing genomic data. Can be used to analyze and display relations between complete genomes, genomic fragments, proteins, ESTs, full length… GeneSifter GeneSifter- Web-based microarray analysis system that combines data management and analytical functions with integrated, current gene annotation from public databases. Product ove… The Sequence Manipulation Suite The Sequence Manipulation Suite- The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. … Broad Institute Genetics Software Broad Institute Genetics Software- Offers a wide range of software for genome sequence analysis, genetic variation, linkage analysis, expression analysis, and PCR primer selection. CREME: Cis-REgulatory Module Explorer CREME: Cis-REgulatory Module Explorer- Identifies modules of putative transcription factor binding sites that are specific to promoters of co-expressed human genes. Provides a res… Genetic Network Maps as Java Applets Genetic Network Maps as Java Applets- Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme. Molecular interactions modelled as Petri N… MapMakerDrawer MapMakerDrawer- Program that draws chromosome maps (as EMF files) using the output of MapMaker EXP. Delphi source code is freely available upon request. The software is available … GENtle GENtle- GPL software for viewing and editing DNA and amino acid sequences. Integrated alignment, PCR, BLAST searches, and shared databases. Windows version is available for downlo… Genetic Linkage Analysis Genetic Linkage Analysis- Offers links and other resources for genetic analysis software from the Rockefeller University. Alice Software Alice Software- Database system to build and publish synonymised checklists of species. Species descriptions include pre-established fields and detailed descriptions employing any… Hands on Genetics Hands on Genetics- Instructional software for basic genetics, such as DNA, PCR, Mendel, Hardy-Weinberg, meiosis and computer simulations. Freeware for Mac and Windows. MuStaR Sequence Variant Database Software MuStaR Sequence Variant Database Software- Designed to create a database of mutation loci, to make this information available to as many people as possible. No longer being mainta… Progeny Software Progeny Software- Supply pedigree drawing and genetic data management software for genetic research with a built-in customizable relational database. Evolutionary Genetics Group, Groningen University Evolutionary Genetics Group, Groningen University- Focuses on evolutionary genetics questions, in particular, how genetic structure and variation affect evolutionary and ecologica… Biomedicum Helsinki: Genome-Scale Biology Biomedicum Helsinki: Genome-Scale Biology- Undertakes genome-scale, high-throughput biological research and its translation into medical benefits. Located in the University of Hel… Gene Center Gene Center- Facilities, seminars and interdisciplinary research, which aims to gain mechanistic insight into the function of cells and organisms in normal and pathological states… Kazusa DNA Research Institute Kazusa DNA Research Institute- Undertakes large scale DNA sequencing projects. Features organization and staff, research projects, databases, and related links. Located in Japan. The Chen Laboratory: University of Texas at Austin The Chen Laboratory: University of Texas at Austin- Studies the mechanisms and evolution of polyploidy and genome function. Polyploidy can be found throughout the evolutionary his… Stanford Medical Genetics Stanford Medical Genetics- Provides information on the labs and the research being undertaken in each, with details of courses, students and staff. National Gene Vector Biorepository National Gene Vector Biorepository- A resource for academic investigators and others conducting gene therapy research focused on the four areas of archiving services, insertional … The Histone Code The Histone Code- The Judd Rice Lab at USC, California, is studying the molecular pathways that establish various histone codes and elucidate their roles in human development and … Chromosome Laboratory Chromosome Laboratory- Developing more sensitive and rapid molecular cytogenetic analyses for use in human clinical cytogenetics. Part of the Dept. of Clinical Genetics, Rigshospi… International Center for Public Health - Center for Applied Genomics International Center for Public Health - Center for Applied Genomics- Research in biology and medicine using novel functional genomic approaches including the application and furt… Division of Molecular Genetics Division of Molecular Genetics- Columbia University Medical Center, Department of Pediatrics, Division of Molecular Genetics. Main research focus is on obesity and type II diabete… Genome Institute Of Singapore Genome Institute Of Singapore- Research institute focused on technology, genetics and biology towards the goal of individualized medicine. Links to publications, research areas, a… Broad Institute Broad Institute- A collaboration of Massachusetts Institute of Technology and Harvard University. Focused on genetic research in the areas of cancer, genome biology, human disease… Translational Genomics Research Institute Translational Genomics Research Institute- Non profit organisation which aims to translate genomic discoveries into advances in human health. Located in Arizona, USA. The European Nutrigenomics Organisation The European Nutrigenomics Organisation- Network for integrating nutritional genomics researchers. EU funded. Genome Biology at UTA Genome Biology at UTA- Information about the genome biology group at University of Texas at Arlington. University of Wisconsin Laboratory of Genetics University of Wisconsin Laboratory of Genetics- Features graduate programs, courses, faculty, research, and staff profiles. Guarente Lab Guarente Lab- Studying the genes regulating ageing. Model organisms include yeast, C. elegans, mice, and humans. Includes a listing of publications and protocols available for dow… The Genome Center: Washington University The Genome Center: Washington University- Research is focused on the large scale generation and analysis of the human genome sequence, and also the sequencing of the genomes of ot… Genetic Information Research Institute Genetic Information Research Institute- Promotes original peer-reviewed, public domain research on genetic information. Includes a database of prototypic sequences and a monthly j… Department of Genetics at Harvard Medical School Department of Genetics at Harvard Medical School- Undertake biomedical research in computational, chromosomal, and developmental genetics. Information of courses, software, hardwa… Genome Atlantic Genome Atlantic- One of five regional centres of Genome Canada. A not-for-profit corporation promoting genomics research in Canada. Wellcome Trust Sanger Institute Wellcome Trust Sanger Institute- Undertakes genome research involving large scale sequencing and analysis. Includes databases and career information. The University of Oklahoma's Advanced Center for Genome Technology The University of Oklahoma's Advanced Center for Genome Technology- Contains methods, protocols and data for human, mouse, bacterial, and fungal genomic and cDNA sequencing projec… Genetics of Mental Retardation and Cortical Malformations Genetics of Mental Retardation and Cortical Malformations- Research group located in Marseille, France. Studying mental retardation and cortical malformations.