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South African National Bioinformatics Institute South African National Bioinformatics Institute
South African National Bioinformatics Institute- SANBI aims to bring genome information, computational biology, and analytical tools to the South African research community. Overview of projects, training and resources i ...
Helix Group at Stanford Helix Group at Stanford
Helix Group at Stanford- This is a research group within the Stanford Medical Informatics laboratory directed by Russ Altman, MD, PhD. They focus on the application of computational techniques to problems in molecular bi ...
Icahn School of Medicine at Mount Sinai: Bioinformatics Laboratory Icahn School of Medicine at Mount Sinai: Bioinformatics Laboratory
Icahn School of Medicine at Mount Sinai: Bioinformatics Laboratory- Provides an overview of the laboratory and details of publications, research projects and the research team. ...
XDigitize XDigitize
XDigitize- A Linux/Unix visualization software system for evaluation of hybridisation experiments. ...
Premier Biosoft International Premier Biosoft International
Premier Biosoft International- Developers of software for real time PCR primer design, TaqMan, molecular beacons, SYBR green, FRET, DNA microarray analysis, restriction cloning, plasmid maps, gateway cloning, protein int ...
Phrap/Consed Phrap/Consed
Phrap/Consed- DNA sequence assembler and finishing tools from the UW Genome Center. ...
Darwin Darwin
Darwin- An interactive tool for peptide and nucleotide sequence analysis. ...
pDRAW32 pDRAW32
pDRAW32- Freeware DNA cloning, analysis and visualization software. ...
Sequence Analysis Sequence Analysis
Sequence Analysis- A freeware Java application that does many standard types of DNA and protein sequence analysis tasks. ...
Oka, Richard Oka, Richard
Oka, Richard- Graduate student at the SDSU/UCSD Joint Doctoral Program in Applied Mechanics and Engineering Sciences in San Diego. ...
The ARB Project The ARB Project
The ARB Project- A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search and generation, genome annotation and visualiz ...
AnnHyb AnnHyb
AnnHyb- Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Publ ...
ARCiB -- Accessible Retired Computers in Biology ARCiB -- Accessible Retired Computers in Biology
ARCiB -- Accessible Retired Computers in Biology- NSF supported project to make old computers accessible to new software in bioinformatics. Provides transitional and supplemental support, especially in structural biology ...
limmaGUI limmaGUI
limmaGUI- A graphical user interface for linear modelling of cDNA and oligonucleotide microarray data to identify differentially expressed genes. ...
JAligner JAligner
JAligner- Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment. ...
EMBOSS EMBOSS
EMBOSS- The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG. ...
MaGe (Magnifying Genomes) - Microbial genome Annotation System MaGe (Magnifying Genomes) - Microbial genome Annotation System
MaGe (Magnifying Genomes) - Microbial genome Annotation System- The MaGe system offers a set of graphical interfaces which allow biologist to perform relevant expert annotation of microbial genomes. ...
MedScan MedScan
MedScan- Commercial Windows natural language processing software for the automated extraction of biological data from scientific literature. ...
Genespotter Genespotter
Genespotter- Commercial Windows software for analyzing biochip image data. ...
DNAMAN DNAMAN
DNAMAN- Commercial software for DNA and Protein sequence analysis and manipulation. Available for Windows and Mac OS X. ...
RGBG Analyzer RGBG Analyzer
RGBG Analyzer- Commercial software to analyses the red, green, blue, and gray color values of user-selected areas of images in gif, tiff, bmp, jpeg format. Windows 2000 and XP. ...
MIRA MIRA
MIRA- A sequence assembly suite with SNP detection for "hard" projects. ...
Tandem Repeats Finder Tandem Repeats Finder
Tandem Repeats Finder- Locates and displays tandem repeats in DNA sequences. ...
Nicolas Vignais Nicolas Vignais
Nicolas Vignais- Post doctoral researcher working on biomechanics project at the Technological University of Compiègne. Includes project information, publications and teaching interests. ...
INCA - INteractive Codon Analysis INCA - INteractive Codon Analysis
INCA - INteractive Codon Analysis- Windows software that computes and charts codon and amino acid frequencies in whole genomes. Produces fully customizable scatter plots with the possibility to export graphics or text fi ...
ADF MAGE-ML ADF MAGE-ML
ADF MAGE-ML- Open source Java software for checking and conversion of MicroArray Array Design data file (ADF -Array Design File- MAGE-ML). ...
Sockeye Sockeye
Sockeye- 3D visualisation platform for Comparative Genomics visualisation. ...
Seqtools Seqtools
Seqtools- Commercial Windows software for batch handling and analysis of nucleotide and protein sequences. ...
Gints Gints
Gints- Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English. ...
SeWeR SeWeR
SeWeR- An integrated portal for common web-based bioinformatics services. Built in Javascript as a standalone browser application. ...
Genome-tools Web Interface Genome-tools Web Interface
Genome-tools Web Interface- Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format. ...
DNPTrapper DNPTrapper
DNPTrapper- A Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions. ...
PhyloSort PhyloSort
PhyloSort- A Java tool to sort phylogenetic trees by searching for user-specified subtrees that contain a monophyletic group of interest defined by operational taxonomic units. ...
FASTA FASTA
FASTA- William Pearson's package for fast sequence comparison tools. ...
BioEdit BioEdit
BioEdit- Free Windows biological sequence alignment editor. ...
MARBL MARBL
MARBL- MARBL is a free (GPL) system to index the text portions of GenBank and associated NLM abstracts. Based on Mumps and the MDH. ...
Geneious Geneious
Geneious- This research software is designed for biologists and not computer scientists. It combines all the major DNA and protein sequence analysis tools into one software solution. ...
BioMAJ BioMAJ
BioMAJ- Workflow engine dedicated to bio-data synchronization and processing. ...
biOpen biOpen
biOpen- Commercial Mac OS X sequence analysis and structure visualization software. ...
GeneRunner GeneRunner
GeneRunner- A fairly old Windows sequence analysis tool for everyday lab use. Formerly a commercial product. ...
Unipro UGENE: Integrated Bioinformatics Tools Unipro UGENE: Integrated Bioinformatics Tools
Unipro UGENE: Integrated Bioinformatics Tools- Free cross-platform bioinformatics software package for DNA and protein sequence analysis. ...
Biomax BioXM Knowledge Management Environment Biomax BioXM Knowledge Management Environment
Biomax BioXM Knowledge Management Environment- Project-centered, distributed software platform that provides a central inventory of information and knowledge. Users create, manage and visualize scientific models as an ex ...
CentiBiN: Centralities in Biological Networks CentiBiN: Centralities in Biological Networks
CentiBiN: Centralities in Biological Networks- Application for the calculation and visualization of centralities for biological networks. ...
Biochemfusion: Enabling Biochemformatics Biochemfusion: Enabling Biochemformatics
Biochemfusion: Enabling Biochemformatics- Software for working with post-translationally or chemically modified peptides and proteins including proteins as both sequences and chemical structures. ...
Cytoscape Cytoscape
Cytoscape- Open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. It is also a general platform ...
GeneSifter GeneSifter
GeneSifter- Provides complete systems for data-intensive genetic analysis applications like microarrays and next gen sequencing-based transcription. From Geospiza, Seattle, USA. ...
DNA Baser Sequence Assembler DNA Baser Sequence Assembler
DNA Baser Sequence Assembler- DNA sequence assembly software package capable of fully automated sequence assembly. ...
CodonCode Corporation CodonCode Corporation
CodonCode Corporation- Offers CodonCode Aligner, a DNA sequence assembly, sequence alignment, contig editing and mutation detection software for Windows and Mac OS X. ...
Generic Model Organism Database Construction Set Generic Model Organism Database Construction Set
Generic Model Organism Database Construction Set- Collection of interoperable open source software components for visualizing, annotation and managing data. ...
BioAfrica.net: Bioinformatics Software and Tools BioAfrica.net: Bioinformatics Software and Tools
BioAfrica.net: Bioinformatics Software and Tools- Bioinformatics software applications and tools developed by researchers. All the tools are open-source and freely available online. ...

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